Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_1718KEGG: mlo:mlr0199 cellulase-like protein. (141 aa)    
Predicted Functional Partners:
Meso_1719
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: bms:BR0902 NADH-ubiquinone oxidoreductase.
 
   
 0.893
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.644
Meso_2211
KEGG: mlo:mlr2813 hypothetical protein.
  
     0.608
Meso_1142
PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein.
  
     0.581
Meso_3345
KEGG: mlo:mlr4354 hypothetical protein.
  
     0.542
Meso_3068
PFAM: heat shock protein DnaJ-like; KEGG: mlo:mll3564 hypothetical protein.
  
     0.534
Meso_1570
KEGG: mlo:mll1106 hypothetical protein.
  
     0.507
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.505
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
  
     0.499
Meso_0691
KEGG: mlo:mlr7403 hypothetical protein.
  
     0.497
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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