Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1724KEGG: mlo:mll0186 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
 
     0.898
Meso_0606
KEGG: sme:SMa1580 hypothetical protein.
  
     0.709
Meso_4096
KEGG: mlo:mll5591 hypothetical protein.
  
     0.693
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.660
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.645
Meso_1155
PFAM: glycosyl transferase, group 1; KEGG: mlo:mll8436 putative transferase.
  
     0.617
Meso_1726
PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll0183 hypothetical protein.
 
     0.614
Meso_0610
PFAM: peptidase A24A, prepilin type IV; KEGG: sme:SMa1578 prepilin peptidase CpaA.
  
     0.606
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.601
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.589
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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