Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1730PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: bme:BMEI0464 lipid A-myristate beta-hydroxylase. (262 aa)    
Predicted Functional Partners:
Meso_1731
PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr0170 hydrolase.
       0.554
Meso_1732
PFAM: protein of unknown function DUF192; KEGG: mlo:mlr0169 hypothetical protein.
       0.512
Meso_1729
TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat serine acetyltransferase-like; KEGG: mlo:mlr0175 serine acetyltransferase.
       0.477
Meso_1733
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:mlr0168 cold shock protein.
       0.444
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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