Meso_1749 protein (Chelativorans sp. BNC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Meso_1747	Meso_1748	Meso_1747	Meso_1748	KEGG: bmb:BruAb1_1390 hypothetical protein.	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	0.692
Meso_1747	Meso_1749	Meso_1747	Meso_1749	KEGG: bmb:BruAb1_1390 hypothetical protein.	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	0.692
Meso_1747	Meso_1750	Meso_1747	Meso_1750	KEGG: bmb:BruAb1_1390 hypothetical protein.	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.	0.505
Meso_1747	thyA	Meso_1747	Meso_1751	KEGG: bmb:BruAb1_1390 hypothetical protein.	Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.	0.501
Meso_1748	Meso_1747	Meso_1748	Meso_1747	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	KEGG: bmb:BruAb1_1390 hypothetical protein.	0.692
Meso_1748	Meso_1749	Meso_1748	Meso_1749	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	0.993
Meso_1748	Meso_1750	Meso_1748	Meso_1750	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.	0.571
Meso_1748	Meso_2428	Meso_1748	Meso_2428	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sil:SPO0833 formate dehydrogenase, beta subunit.	0.733
Meso_1748	Meso_2735	Meso_1748	Meso_2735	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	PFAM: band 7 protein; KEGG: mlo:mlr3021 hypothetical protein.	0.547
Meso_1748	Meso_2792	Meso_1748	Meso_2792	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein.	0.759
Meso_1748	ftsH	Meso_1748	Meso_3167	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.893
Meso_1748	hflX	Meso_1748	Meso_1612	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	GTP-binding protein, HSR1-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.590
Meso_1748	thyA	Meso_1748	Meso_1751	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.	0.568
Meso_1748	yidC	Meso_1748	Meso_0376	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.	0.563
Meso_1749	Meso_1747	Meso_1749	Meso_1747	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	KEGG: bmb:BruAb1_1390 hypothetical protein.	0.692
Meso_1749	Meso_1748	Meso_1749	Meso_1748	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	Protease FtsH subunit HflC; HflC and HflK could regulate a protease.	0.993
Meso_1749	Meso_1750	Meso_1749	Meso_1750	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.	0.571
Meso_1749	Meso_2428	Meso_1749	Meso_2428	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sil:SPO0833 formate dehydrogenase, beta subunit.	0.733
Meso_1749	Meso_2735	Meso_1749	Meso_2735	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	PFAM: band 7 protein; KEGG: mlo:mlr3021 hypothetical protein.	0.566
Meso_1749	Meso_2792	Meso_1749	Meso_2792	Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.	PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein.	0.759