Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1789PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2429 probable transporter. (400 aa)    
Predicted Functional Partners:
Meso_0973
KEGG: mlo:mll1459 hypothetical protein.
  
     0.556
Meso_2861
PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: ret:RHE_CH02426 hypothetical protein.
  
    0.537
Meso_3130
PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator.
  
     0.525
Meso_1788
PFAM: peptidase M23B; KEGG: mlo:mll8577 hypothetical protein.
     
 0.481
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.480
Meso_3231
KEGG: mlo:mlr4119 hypothetical protein.
  
     0.465
Meso_3709
KEGG: mlo:mll4958 hypothetical protein.
  
     0.446
Meso_1342
PFAM: TadE-like; KEGG: mlo:mll7596 hypothetical protein.
  
     0.442
Meso_0170
PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc00784 putative iron binding protein.
  
  
 0.426
Meso_0828
Hypothetical protein; KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor.
  
  
 0.426
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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