Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1800Peptidase M23B; PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: bmb:BruAb1_0900 peptidase, M23/M37 family. (412 aa)    
Predicted Functional Partners:
surE
3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.721
Meso_1801
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mll1078 L-isoaspartyl protein carboxyl methyltransferase.
     
 0.654
Meso_1708
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mlr0215 penicillin-binding protein.
 
   
 0.639
Meso_3986
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll3238 penicillin-binding protein.
  
   
 0.629
Meso_0883
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll7657 penicillin-binding protein.
  
   
 0.621
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.612
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.580
Meso_1431
PFAM: glycosyl transferase, family 51; KEGG: sme:SMa1905 putative MrcB penicillin binding protein B.
  
   
 0.577
Meso_1810
PFAM: glycoside hydrolase, family 3-like; KEGG: mlo:mll1089 probable sugar hydrolase.
 
  
 0.570
Meso_0949
Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.522
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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