Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1859KEGG: chy:CHY_2360 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily. (328 aa)    
Predicted Functional Partners:
Meso_1857
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein.
  0.915
Meso_1856
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein.
 
  0.878
Meso_1858
KEGG: rpb:RPB_0234 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
 
 
 
0.874
Meso_0076
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sil:SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: binding-protein-dependent transport systems inner membrane component ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase.
 
0.778
Meso_1860
Uncharacterized protein putative amidase-like protein; KEGG: nph:NP0414A hypothetical protein.
       0.773
Meso_0561
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1882 putative integral membrane transport protein.
 
  0.738
Meso_1833
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1631 ABC transporter, permease protein.
 
  0.705
Meso_2406
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_4129 binding-protein-dependent transport systems inner membrane component.
 
  0.683
Meso_3729
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5658 putative peptide ABC transporter permease protein.
 
  0.668
Meso_3133
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
 
  0.667
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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