Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1865PFAM: extracellular solute-binding protein, family 1; KEGG: bja:bll6825 ABC transporter substrate-binding protein. (352 aa)    
Predicted Functional Partners:
Meso_1862
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP0414 polyamine ABC transporter, permease protein.
 
 0.944
Meso_1937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll6253 ABC transporter permease protein.
 
 0.943
Meso_1863
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1234 motC.
 
 
 0.867
Meso_1864
PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: bja:bll3241 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.803
Meso_2370
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3546 ABC transporter permease protein.
 
 0.795
Meso_3746
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi00400 putative spermidineputrescine ABC transporter permease protein; RBL01738.
 
 0.726
Meso_0166
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6537 ABC transporter, polyamine transport protein, permease protein.
 
 0.664
Meso_3958
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.657
Meso_1861
PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1085 glycerol-3-phosphate dehydrogenase.
       0.631
Meso_2371
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPOA0383 spermidine/putrescine ABC transporter, permease protein.
 
 
 0.623
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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