Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1868PFAM: iron-containing alcohol dehydrogenase; KEGG: sme:SMc01582 putative alcohol dehydrogenase protein. (381 aa)    
Predicted Functional Partners:
Meso_1869
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01588 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family.
 
 
 0.950
Meso_1870
PFAM: glutamine synthetase, catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase.
 
   
 0.891
Meso_1872
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: sme:SMc01602 hypothetical protein.
 
   
 0.809
Meso_1871
PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc01600 hypothetical protein.
 
   
 0.774
Meso_2263
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bms:BR1061 alcohol dehydrogenase, zinc-containing.
  
 
 0.766
Meso_2671
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20170 probable glutathione-dependent formaldehyde dehydrogenase protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 
 0.729
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
  
 0.548
Meso_1873
PFAM: zinc/iron permease; KEGG: sme:SMb20011 zinc transporter, ZIP family.
  
    0.491
Meso_2811
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: mlo:mlr5175 indolepyruvate ferredoxin oxidoreductase.
  
  
 0.426
Meso_2744
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain.
   
  
 0.423
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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