Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1871PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc01600 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Meso_1872
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: sme:SMc01602 hypothetical protein.
 
  
 0.888
Meso_1870
PFAM: glutamine synthetase, catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase.
 
  
 0.838
Meso_1869
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01588 putative aldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family.
 
     0.811
Meso_1868
PFAM: iron-containing alcohol dehydrogenase; KEGG: sme:SMc01582 putative alcohol dehydrogenase protein.
 
   
 0.774
Meso_2987
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: ret:RHE_PE00074 probable cytosine deaminase protein.
  
  
  0.617
Meso_2306
PFAM: isochorismatase hydrolase; KEGG: bpa:BPP3892 putative hydrolase.
  
  
 0.405
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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