Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_1873PFAM: zinc/iron permease; KEGG: sme:SMb20011 zinc transporter, ZIP family. (259 aa)    
Predicted Functional Partners:
Meso_0861
Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.662
Meso_1874
KEGG: bms:BR2146 lipoprotein, putative.
       0.648
Meso_1771
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mlo:mll0838 c-type cytochrome biogenesis protein.
   
    0.629
Meso_0755
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein.
  
 0.500
Meso_1868
PFAM: iron-containing alcohol dehydrogenase; KEGG: sme:SMc01582 putative alcohol dehydrogenase protein.
  
    0.491
Meso_0336
PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: atc:AGR_C_4456 hypothetical protein.
   
    0.484
Meso_0811
PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: fra:Francci3_2810 FAD-binding 9, siderophore-interacting.
   
    0.484
Meso_1872
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: sme:SMc01602 hypothetical protein.
       0.444
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
      
 0.431
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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