Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1887KEGG: nwi:Nwi_1620 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Meso_1886
TIGRFAM: phage head-tail adaptor, putative; KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative.
 
 
   0.986
Meso_1889
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: nwi:Nwi_1478 uncharacterized phage protein (possible DNA packaging).
 
 
   0.966
Meso_1888
TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40-like; KEGG: nwi:Nwi_1621 phage protein, HK97, GP10.
 
     0.953
Meso_1885
PFAM: phage Terminase; KEGG: nwi:Nwi_1472 phage terminase.
 
     0.937
Meso_1884
KEGG: rsp:RSP_2351 hypothetical protein.
 
     0.900
Meso_1898
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2360 putative head portal protein, HK97 family.
 
 
   0.857
Meso_1895
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family.
 
 
   0.790
Meso_1883
PFAM: phage minor tail; KEGG: ssn:SSO_2416 putative minor tail protein.
       0.668
Meso_2127
PFAM: glycosyl transferase, family 8; KEGG: ret:RHE_CH03469 glycosyltransferase (sulfolipid biosynthesis) protein.
  
     0.664
Meso_1892
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2355 HNH nuclease / probable phage PHI-105 holin-like protein.
 
     0.641
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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