Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1929Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC1167 transcriptional regulator. (347 aa)    
Predicted Functional Partners:
Meso_2744
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain.
    
 
 0.849
Meso_1931
PFAM: BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0992 probable pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.761
Meso_3575
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mlo:msl5090 phosphocarrier protein HPr.
 
 
 
 0.758
Meso_1930
PFAM: Endoribonuclease L-PSP; KEGG: bja:bll7189 hypothetical protein.
       0.727
Meso_1932
KEGG: bja:bsl7192 putative sarcosine oxidase alpha subunit.
       0.727
Meso_1933
PFAM: FAD dependent oxidoreductase; KEGG: bja:bll7193 opine oxidase subunit B.
       0.727
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
   
 0.632
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.589
Meso_1934
PFAM: CoA-binding; KEGG: eba:ebA5611 organic acid-CoA ligase (ADP forming),similar to feruloyl-CoA synthetase.
       0.532
Meso_3707
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: sme:SMb20854 putative sugar uptake ABC transporter permease protein; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.451
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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