Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1946PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_3340 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Meso_1945
PFAM: amidohydrolase 2; KEGG: atc:AGR_L_3341 hypothetical protein.
 
  
 0.989
Meso_1947
PFAM: dihydrodipicolinate synthetase; KEGG: atc:AGR_L_3338 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.987
Meso_1948
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein.
 
   
 0.673
Meso_3970
PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD).
 
  
 0.493
Meso_1956
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
 
    
0.452
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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