STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1947PFAM: dihydrodipicolinate synthetase; KEGG: atc:AGR_L_3338 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (301 aa)    
Predicted Functional Partners:
Meso_1946
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_3340 hypothetical protein.
 
  
 0.987
Meso_3971
PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7953 hypothetical protein; Belongs to the DapA family.
  
  
  0.962
Meso_0844
PFAM: aldehyde dehydrogenase; KEGG: sme:SMb20262 putative semialdehyde dehydrogenase protein.
 
 
 0.946
Meso_1945
PFAM: amidohydrolase 2; KEGG: atc:AGR_L_3341 hypothetical protein.
 
  
 0.910
Meso_3970
PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD).
    
 0.909
Meso_1948
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein.
 
   
 0.784
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.632
Meso_3340
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: mlo:mlr4380 chorismate mutase.
  
  
 0.553
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.531
Meso_1956
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
 
   
 0.480
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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