Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1957PFAM: oxidoreductase-like Oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: rba:RB6199 dehydrogenase homolog. (341 aa)    
Predicted Functional Partners:
Meso_1956
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
 
     0.800
Meso_1953
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sma:SAV3146 putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
  
    0.774
Meso_1951
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1437 probable ABC transporter permease.
  
    0.773
Meso_1952
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20142 putative oligopeptide ABC transporter permease protein.
       0.773
Meso_1954
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20141 putative oligopeptide ABC transporter ATP-binding protein.
       0.773
Meso_1955
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atc:AGR_C_2588 hypothetical protein.
  
    0.773
Meso_0487
PFAM: UDP-glucose/GDP-mannose dehydrogenase 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ret:RHE_PE00044 probable UDP-glucose 6-dehydrogenase/GDP-mannose 6-dehydrogenase protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.652
Meso_1950
PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMa1438 putative ABC transporter, periplasmic solute-binding protein.
       0.642
Meso_3973
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mst:Msp_0290 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.575
Meso_0832
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mlo:mll7579 probable aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.561
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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