Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1971KEGG: mlo:mlr7894 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Meso_0761
KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical.
  
     0.761
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
     0.756
Meso_3393
PFAM: outer membrane lipoprotein omp19; KEGG: sme:SMc02475 putative outer membrane lipoprotein precursor.
  
     0.732
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
 
   
 0.719
Meso_2738
KEGG: mlo:mlr3024 hypothetical protein.
  
     0.712
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.708
rlmJ
Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.708
clpP1
ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
  0.706
Meso_1336
PFAM: peptidase S14, ClpP; KEGG: pae:PA3326 probable Clp-family ATP-dependent protease; Belongs to the peptidase S14 family.
  
 
  0.706
clpP2
ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
  0.706
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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