Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1984AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein. (1273 aa)    
Predicted Functional Partners:
Meso_1786
KEGG: mlo:mlr0006 hypothetical protein.
 
   
 0.774
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.766
Meso_2154
KEGG: sme:SMc02685 hypothetical protein.
  
     0.766
Meso_0960
KEGG: mlo:mll7791 hypothetical protein.
  
     0.762
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.760
Meso_0761
KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical.
  
     0.759
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.759
Meso_1971
KEGG: mlo:mlr7894 hypothetical protein.
  
     0.756
Meso_3489
KEGG: mlo:mll5001 hypothetical protein.
  
    0.750
Meso_3441
Hypothetical protein; KEGG: mlo:msl3747 contains similarity to tropomyosin.
  
     0.745
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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