Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bamDPutative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (288 aa)    
Predicted Functional Partners:
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 0.989
Meso_1142
PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein.
  
 0.973
Meso_0241
KEGG: ppu:PP1573 major tail protein, putative.
   
 0.960
Meso_1998
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
     0.845
Meso_1572
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mlo:mll1103 long-chain fatty acid transport protein.
   
 
 0.774
Meso_2415
KEGG: jan:Jann_3574 hypothetical protein.
   
 
 0.765
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.760
tolB
TolB-like protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.758
Meso_1760
KEGG: mlo:mll7863 putative survival protein surA precursor (peptidyl-prolyl cis-trans isomerase SurA).
   
 
 0.749
Meso_1041
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mlo:mll1342 ABC transporter, permease protein.
 
   
 0.738
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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