Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2017PFAM: Lytic transglycosylase, catalytic; KEGG: mlo:mll1569 probable transglycosylase. (205 aa)    
Predicted Functional Partners:
Meso_1512
PFAM: Sporulation related Lytic transglycosylase, catalytic; KEGG: mlo:mll3791 transglycosylase.
 
   
 0.672
Meso_2331
PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase.
  
     0.620
Meso_3847
PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase.
  
     0.590
Meso_0517
PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase.
  
     0.589
Meso_2018
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: mlo:mll1570 N-acetylmuramoyl-L-alanine amidase.
     
 0.545
Meso_2019
PFAM: heat shock protein DnaJ-like protein of unknown function DUF1332; KEGG: bms:BR1445 DnaJ domain protein.
       0.529
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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