Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2063PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor. (645 aa)    
Predicted Functional Partners:
Meso_2064
PFAM: periplasmic binding protein; KEGG: bms:BR1346 iron compound ABC transporter, periplasmic iron compound-binding protein.
 
  
 0.947
Meso_2065
PFAM: transport system permease protein; KEGG: rsp:RSP_2404 ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.925
Meso_2067
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; KEGG: psb:Psyr_0203 TonB, C-terminal; TC 2.C.1.1.1.
 
 
 
 0.905
Meso_2066
PFAM: ABC transporter related; SMART: ATPase; KEGG: rru:Rru_A0491 ABC transporter component.
 
   
 0.904
Meso_1435
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.842
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
    
 0.812
Meso_2915
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
    
 0.812
pal
OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.733
Meso_2754
PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC.
  
  
 0.728
Meso_1262
PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ret:RHE_CH02810 outer membrane lipoprotein.
  
  
 0.726
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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