Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2069PFAM: OmpA/MotB; KEGG: mlo:mlr2412 hypothetical protein. (703 aa)    
Predicted Functional Partners:
Meso_3188
PFAM: OmpA/MotB; KEGG: mlo:mlr3926 similar to flagellar motor protein MotB.
   
 0.828
Meso_0284
PFAM: OmpA/MotB; KEGG: mlo:mlr2931 flagellar motor protein MotB.
   
 0.826
Meso_0652
PFAM: polysaccharide export protein; KEGG: mlo:mll5251 exopolysaccharide production protein exoF.
  
 0.810
Meso_2593
PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein).
  
 0.796
Meso_2754
PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC.
   
 0.770
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
   
 0.717
Meso_3342
PFAM: protein of unknown function DUF1236 protein of unknown function DUF1058 SH3, type 3; KEGG: ret:RHE_CH03012 hypothetical protein.
  
     0.701
Meso_1156
PFAM: polysaccharide export protein; KEGG: bmb:BruAb1_0798 capsule polysaccharide export protein, hypothetical.
   
 0.700
Meso_0279
PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like flagellar basal body FlaE; KEGG: mlo:mlr2937 flagellar hook protein FlgE.
   
 
 0.698
Meso_2063
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor.
     
 0.688
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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