Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2081TrkA-C; PFAM: Citrate transporter TrkA-C; KEGG: bmb:BruAb2_0567 transporter, TrkA family. (593 aa)    
Predicted Functional Partners:
cysN
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.551
Meso_0056
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.532
Meso_2080
PFAM: ABC transporter related; SMART: ATPase; KEGG: rsp:RSP_2596 ABC transporter, ATPase subunit.
       0.493
Meso_1536
Malic enzyme, NAD-binding protein; PFAM: phosphate acetyl/butaryl transferase malic enzyme-like malic enzyme, NAD-binding; KEGG: mlo:mlr0809 malate dehydrogenase (decarboxylating).
  
  
 0.449
Meso_4030
PFAM: phosphate acetyl/butaryl transferase malic enzyme-like malic enzyme, NAD-binding; KEGG: mlo:mlr5329 NADP-dependent malic enzyme.
  
  
 0.449
Meso_0864
Multisubunit sodium/proton antiporter, MrpA subunit; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L-like NADH/Ubiquinone/plastoquinone (complex I); KEGG: sme:SMc00051 putative cation efflux system protein; TC 2.A.63.1.
  
  
 0.419
Meso_2079
KEGG: rsp:RSP_2597 ABC transporter, periplasmic substrate-binding protein.
       0.415
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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