Meso_2091 protein (Chelativorans sp. BNC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Meso_2091

PFAM: Acyl-CoA dehydrogenase, type 2-like; KEGG: nfa:nfa24970 putative acyl-CoA dehydrogenase. (389 aa)

Predicted Functional Partners:

Meso_1524

0.902

Meso_3751

0.902

Meso_0021

0.813

Meso_3034

0.764

Meso_3752

0.764

Meso_2951

0.759

Meso_4101

0.728

Meso_3033

0.703

Meso_2092

0.700

Meso_0481

0.611

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Meso_0021	Meso_0481	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	0.483
Meso_0021	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	0.982
Meso_0021	Meso_2091	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Acyl-CoA dehydrogenase, type 2-like; KEGG: nfa:nfa24970 putative acyl-CoA dehydrogenase.	0.813
Meso_0021	Meso_3033	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: electron transfer flavoprotein beta-subunit; KEGG: mlo:mlr3487 electron transfer flavoprotein beta chain, (ETFSS).	0.786
Meso_0021	Meso_3034	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: bmb:BruAb1_1946 EtfA, electron transfer flavoprotein, alpha subunit.	0.815
Meso_0021	Meso_3751	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bpm:BURPS1710b_0633 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase.	0.983
Meso_0021	Meso_4101	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.938
Meso_0481	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.483
Meso_0481	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	0.485
Meso_0481	Meso_2091	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	PFAM: Acyl-CoA dehydrogenase, type 2-like; KEGG: nfa:nfa24970 putative acyl-CoA dehydrogenase.	0.611
Meso_0481	Meso_2951	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_C6106 enoyl-CoA hydratase/isomerase.	0.763
Meso_0481	Meso_3751	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bpm:BURPS1710b_0633 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase.	0.665
Meso_1524	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.982
Meso_1524	Meso_0481	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.	0.485
Meso_1524	Meso_2091	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Acyl-CoA dehydrogenase, type 2-like; KEGG: nfa:nfa24970 putative acyl-CoA dehydrogenase.	0.902
Meso_1524	Meso_2951	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_C6106 enoyl-CoA hydratase/isomerase.	0.706
Meso_1524	Meso_3033	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: electron transfer flavoprotein beta-subunit; KEGG: mlo:mlr3487 electron transfer flavoprotein beta chain, (ETFSS).	0.786
Meso_1524	Meso_3034	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: bmb:BruAb1_1946 EtfA, electron transfer flavoprotein, alpha subunit.	0.815
Meso_1524	Meso_3751	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bpm:BURPS1710b_0633 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase.	0.983
Meso_1524	Meso_3752	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.741