STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2102TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin Autotransporter beta-domain; KEGG: psb:Psyr_3733 outer membrane autotransporter barrel. (1006 aa)    
Predicted Functional Partners:
Meso_0338
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: sme:SMc01657 putative ferrichrome-iron receptor precursor protein.
    
 
 0.701
Meso_2232
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: sme:SMa1155 cation transport P-type ATPase, hypothetical.
   
 
 0.672
Meso_0616
Peptidase, metallopeptidase; PFAM: Hemolysin-type calcium-binding region peptidase M10A and M12B, matrixin and adamalysin peptidase, metallopeptidases; SMART: Peptidase, metallopeptidases; KEGG: sme:SMa0034 possible protease.
  
 
 0.616
Meso_0791
Animal heme peroxidase; PFAM: Hemolysin-type calcium-binding region Animal haem peroxidase; KEGG: ppu:PP2561 secreted hemolysin-type calcium-binding bacteriocin, putative.
  
 
 0.616
Meso_0793
PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein.
  
 
 0.616
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
  0.565
Meso_0929
Hypothetical protein.
  
  
 0.530
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.516
Meso_1111
KEGG: dra:DR0691 hypothetical protein.
  
  
 0.505
Meso_3532
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Pertactin Autotransporter beta-domain; KEGG: bmb:BruAb2_1085 outer membrane autotransporter.
 
  
 0.497
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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