Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2103PFAM: Lytic transglycosylase, catalytic; KEGG: bmb:BruAb1_0067 transglycosylase SLT domain protein. (249 aa)    
Predicted Functional Partners:
Meso_1695
CDP-diacylglycerol-choline O-phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.587
Meso_2104
TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: mlo:mlr2526 methylated-DNA-protein-cystein methyltransferase.
       0.538
Meso_3343
TIGRFAM: lytic murein transglycosylase; KEGG: sme:SMc04411 putative membrane-bound lytic murein transglycosylase signal peptide protein.
  
   
 0.509
Meso_3988
Protein required for attachment to host cells-like protein; KEGG: mlo:mlr3233 hypothetical protein.
  
     0.481
Meso_0859
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein.
  
     0.478
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
  
   
 0.476
Meso_2025
PFAM: glycoside hydrolase, family 25; KEGG: bmb:BruAb1_1442 glycosyl hydrolase, family 25.
  
    0.462
Meso_0096
KEGG: bms:BRA0423 outer membrane protein, 31 kDa.
  
     0.448
Meso_0635
PFAM: glycoside hydrolase, family 25; KEGG: sme:SMb21091 putative cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein.
  
    0.444
Meso_4038
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bms:BR0139 lipoprotein, putative.
  
     0.434
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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