Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2117PFAM: glycosyl transferase, group 1; KEGG: bmb:BruAb1_1496 LpcC, lipopolysaccharide core biosynthesis mannosyltransferase. (362 aa)    
Predicted Functional Partners:
Meso_2116
PFAM: glycosyl transferase, family 25; KEGG: bms:BR0321 glycosyl transferase, family 25.
 
   
 0.861
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
     
 0.809
Meso_2115
KEGG: ath:At1g64980 expressed protein.
  
  
 0.792
Meso_2114
PFAM: glycosyl transferase, family 25; KEGG: bmb:BruAb1_1592 glycosyl transferase, family 25.
 
   
 0.689
Meso_0438
Three-deoxy-D-manno-octulosonic-acid transferase-like protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
   
 0.662
Meso_1695
CDP-diacylglycerol-choline O-phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.548
Meso_1154
PFAM: sugar transferase; KEGG: mlo:mll8435 probable glycosyl transferase.
  
  
 0.486
Meso_2127
PFAM: glycosyl transferase, family 8; KEGG: ret:RHE_CH03469 glycosyltransferase (sulfolipid biosynthesis) protein.
   
 0.483
Meso_2421
Maltooligosyl trehalose hydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme.
   
 0.467
Meso_2675
Maltooligosyl trehalose hydrolase; KEGG: rsp:RSP_2450 putative alpha-amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
   
 0.467
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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