Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2121PFAM: Extensin-like-like; KEGG: bmb:BruAb1_1501 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Meso_2120
PFAM: Extensin-like-like; KEGG: mlo:mlr2573 hypothetical protein.
 
    
0.662
Meso_2122
PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: mlo:mlr2581 hemolysin.
       0.622
Meso_2712
PFAM: protein of unknown function DUF1007; KEGG: mlo:mlr2979 hypothetical protein.
  
     0.616
Meso_2119
KEGG: bmb:BruAb2_0556 hypothetical protein.
       0.555
Meso_1498
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
  
     0.510
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.441
Meso_0027
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll5621 hypothetical protein.
  
     0.417
Meso_0690
KEGG: mlo:mll7402 hypothetical protein.
  
   
 0.401
Meso_1550
TIGRFAM: conserved hypothetical protein; KEGG: bmb:BruAb1_0876 hypothetical protein.
  
     0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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