Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2154KEGG: sme:SMc02685 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Meso_2153
PFAM: peptidase M24; KEGG: mlo:mlr2682 probable hydrolase/peptidase.
 
     0.770
Meso_0960
KEGG: mlo:mll7791 hypothetical protein.
  
     0.768
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
     0.766
Meso_2152
PFAM: protein of unknown function DUF152; KEGG: mlo:mlr2681 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.762
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.743
Meso_3489
KEGG: mlo:mll5001 hypothetical protein.
  
     0.731
Meso_3393
PFAM: outer membrane lipoprotein omp19; KEGG: sme:SMc02475 putative outer membrane lipoprotein precursor.
  
     0.726
Meso_1131
KEGG: mlo:mlr8393 hypothetical protein.
  
     0.713
Meso_3165
PFAM: porin, opacity type; KEGG: mlo:mll3878 hypothetical protein.
  
     0.712
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.708
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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