Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2170KEGG: mlo:mll2721 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.744
Meso_0426
KEGG: mlo:mlr8251 hypothetical protein.
  
     0.723
Meso_2738
KEGG: mlo:mlr3024 hypothetical protein.
  
     0.720
Meso_0312
KEGG: atc:AGR_C_1076 hypothetical protein.
  
     0.694
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
       0.674
Meso_1498
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
  
     0.666
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.653
Meso_0167
AsmA; PFAM: AsmA; KEGG: mlo:mll6538 AsmA protein, assembly of outermembrane proteins.
  
     0.637
Meso_2741
PFAM: protein of unknown function DUF459; KEGG: mlo:mlr3028 hypothetical protein.
  
     0.613
Meso_3165
PFAM: porin, opacity type; KEGG: mlo:mll3878 hypothetical protein.
  
     0.605
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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