Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2173PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll2715 ATP-binding protein of ABC transporter. (616 aa)    
Predicted Functional Partners:
Meso_2174
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc00186 putative ABC transporter ATP-binding transmembrane protein.
 
  
 
0.984
Meso_2172
Hypothetical protein.
       0.737
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.640
Meso_1937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll6253 ABC transporter permease protein.
   
 
  0.635
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.603
Meso_0063
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
   
 
0.591
Meso_0975
PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: bms:BR0442 ABC transporter, ATP-binding/permease protein.
  
 
0.578
Meso_2671
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20170 probable glutathione-dependent formaldehyde dehydrogenase protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  0.527
trmL
tRNA/rRNA methyltransferase (SpoU); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
       0.524
Meso_2175
KEGG: mlo:msr2723 hypothetical protein.
       0.468
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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