Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2180KEGG: mlo:mlr2732 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Meso_2179
PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: mlo:mlr2730 probable regulatory protein.
  
 0.982
Meso_2181
TIGRFAM: conserved hypothetical membrane protein; KEGG: mlo:mlr2734 hypothetical protein.
 
    0.962
Meso_2182
PFAM: protein of unknown function DUF1355; KEGG: mlo:mlr2735 hypothetical protein.
 
     0.901
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
  
   
 0.779
Meso_2178
PFAM: protein of unknown function DUF1285; KEGG: mlo:mll2728 hypothetical protein.
 
     0.678
Meso_2176
PFAM: Polynucleotide adenylyltransferase region; KEGG: mlo:mll2726 tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.663
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
 
  
 0.615
Meso_3257
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr3815 hypothetical protein.
 
  
 0.614
Meso_2177
PFAM: NUDIX hydrolase; KEGG: mlo:mll2727 hypothetical protein.
       0.595
Meso_1380
KEGG: mlo:mll0656 hypothetical protein.
  
     0.590
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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