Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2206PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pae:PA4170 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Meso_3582
TIGRFAM: thioredoxin; PFAM: glutaredoxin Thioredoxin domain; KEGG: atc:AGR_C_37 thioredoxin C-1; Belongs to the thioredoxin family.
  
 
 0.856
Meso_4088
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: sme:SMb20964 putative anti-oxidant protein, AhpCTSA family.
  
 
 0.738
Meso_1410
PFAM: ferredoxin; KEGG: mlo:msl0793 ferredoxin.
   
 
 0.673
Meso_3272
TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_4 Thioredoxin domain; KEGG: mlo:mll4432 thioredoxin.
  
 
 0.573
Meso_2259
PFAM: Thioredoxin domain; KEGG: mlo:mll6589 thioredoxin.
  
 
 0.552
Meso_2643
PFAM: aminotransferase, class I and II Thioredoxin domain; KEGG: bcl:ABC2888 aminotransferase.
  
 
 0.507
Meso_3037
PFAM: Redoxin; KEGG: mlo:mll3505 thioredoxin-like protein.
  
 
 0.507
Meso_0004
PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; KEGG: mlo:mll5577 molybdenum cofactor biosynthesis protein.
  
    0.506
Meso_2207
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mlo:mlr2805 hypothetical protein.
       0.501
Meso_2205
KEGG: mlo:mlr2761 hypothetical protein.
       0.480
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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