Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2211KEGG: mlo:mlr2813 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Meso_2213
Cell cycle transcriptional regulator CtrA; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mll2816 two-component transcriptional regulator.
  
 0.980
Meso_2750
PFAM: response regulator receiver; KEGG: mlo:mlr3041 chemotaxis response regulator.
  
 0.966
Meso_1740
Cell cycle control histidine kinase CckA; KEGG: mlo:mll0767 sensor kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
  
 0.962
Meso_2210
PFAM: Uncharacterised conserved protein UCP033924; KEGG: mlo:mll2811 hypothetical protein.
 
     0.829
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
 
 0.774
Meso_2216
PFAM: protein of unknown function DUF1153; KEGG: mlo:msl2821 hypothetical protein.
  
    0.757
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.735
Meso_3023
KEGG: mlo:mlr3476 hypothetical protein.
  
     0.730
Meso_0894
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mlr7684 two-component system, regulatory protein.
  
 
 0.729
Meso_0440
KEGG: mlo:msl8272 hypothetical protein.
  
     0.719
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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