Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2218Oxidoreductase-like protein; PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll2825 probable oxidoreductase. (330 aa)    
Predicted Functional Partners:
Meso_0832
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mlo:mll7579 probable aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.926
Meso_3973
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mst:Msp_0290 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.712
Meso_1392
PFAM: protein of unknown function DUF1009; KEGG: mlo:mll0631 hypothetical protein.
      0.686
Meso_2584
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpa:RPA3350 putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.657
Meso_0487
PFAM: UDP-glucose/GDP-mannose dehydrogenase 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ret:RHE_PE00044 probable UDP-glucose 6-dehydrogenase/GDP-mannose 6-dehydrogenase protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.521
Meso_2219
Recombinase; PFAM: Resolvase-like Recombinase; KEGG: bja:blr6992 hypothetical protein.
       0.437
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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