Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Meso_2224PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc01698 putative oxidoreductase protein. (251 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 0.760
Meso_2223
Multi-sensor signal transduction histidine kinase; KEGG: sme:SMa1229 FixL oxygen regulated histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
     
 0.502
Meso_2222
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: sme:SMa1227 FixJ transcriptional activator.
     
 0.491
Meso_3682
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein.
  
 
  0.483
Meso_3522
PFAM: short-chain dehydrogenase/reductase SDR SEC-C motif; KEGG: sme:SMc01204 putative transmembrane oxidoreductase protein oxidoreductase.
 
 
 
0.472
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.465
Meso_3769
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
0.454
Meso_2220
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: mlo:mll6578 nitrogen fixation regulation protein fixK.
   
  0.436
Meso_2942
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pae:PA1379 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
0.432
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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