Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2230KEGG: mlo:mll6587 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Meso_2237
PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I.
 
   
 0.590
Meso_1351
PFAM: NUDIX hydrolase; KEGG: mlo:mlr0843 hypothetical protein.
  
     0.550
Meso_2229
PFAM: protein of unknown function UPF0118; KEGG: sme:SMb21335 conserved putative membrane protein, possibly a permease.
       0.528
Meso_2231
UspA; PFAM: UspA; KEGG: mlo:mlr6594 hypothetical protein.
       0.527
Meso_2232
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: sme:SMa1155 cation transport P-type ATPase, hypothetical.
       0.492
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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