STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2233PFAM: CBS domain containing protein transport-associated; KEGG: sme:SMa1086 hypothetical protein. (232 aa)    
Predicted Functional Partners:
Meso_3110
PFAM: protein of unknown function DUF1328; KEGG: mlo:msr3702 hypothetical protein.
  
    0.648
Meso_3392
PFAM: protein of unknown function DUF1328; KEGG: mlo:msr4317 hypothetical protein.
  
    0.648
Meso_1219
PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.639
Meso_4008
PFAM: CsbD-like; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.639
Meso_0732
PFAM: histone deacetylase superfamily; KEGG: mlo:mlr7469 similar to histone deacetylase.
  
  
 0.635
Meso_2232
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: sme:SMa1155 cation transport P-type ATPase, hypothetical.
  
    0.602
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.584
Meso_2231
UspA; PFAM: UspA; KEGG: mlo:mlr6594 hypothetical protein.
     
 0.499
Meso_0433
Kef-type potassium/proton antiporter, CPA2 family; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: bms:BRA0210 glutathione-regulated potassium-efflux system protein, putative; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.491
Meso_2226
DNA polymerase III, epsilon subunit; KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: CBS domain containing protein Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.
     
 0.441
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.