Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2237PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I. (109 aa)    
Predicted Functional Partners:
Meso_2792
PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein.
  
 
 0.914
Meso_2165
Cytochrome b/b6-like protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.888
Meso_2428
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sil:SPO0833 formate dehydrogenase, beta subunit.
   
 
 0.876
Meso_3508
PFAM: Rieske [2Fe-2S] region FAD dependent oxidoreductase; KEGG: cef:CE2887 hypothetical protein.
  
 
 0.869
Meso_2166
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.864
Meso_2604
PFAM: Rieske [2Fe-2S] region; KEGG: bja:bll6221 Rieske iron-sulfur protein.
  
 
 0.864
Meso_2251
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: sme:SMa0615 FixO3 cytochrome-c oxidase subunit.
  
 
 0.846
Meso_2250
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: sme:SMa0612 FixN3 cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.829
Meso_0746
PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr7496 cytochrome c oxidase subunit III.
  
 
 0.804
Meso_2476
PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III.
  
 
 0.804
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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