Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2238UspA; PFAM: UspA; KEGG: sme:SMa1158 hypothetical protein. (280 aa)    
Predicted Functional Partners:
Meso_2237
PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I.
  
    0.689
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.466
Meso_2236
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: nwi:Nwi_1947 putative phosphoketolase.
  
    0.439
Meso_3569
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; KEGG: mlo:mlr3180 O6-methylguanine-DNA methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: Helix-turn-helix, AraC type.
 
  
 0.420
Meso_2282
PFAM: protein of unknown function DUF214; KEGG: bja:bll7987 hypothetical protein.
  
     0.411
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.