Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2243TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: rpa:RPA4145 dissimilatory nitrite reductase. (367 aa)    
Predicted Functional Partners:
Meso_2245
TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: sme:SMc04047 probable pseudoazurin (blue copper protein).
 
 
 
 0.926
Meso_2077
TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: sme:SMa1243 Azu1 pseudoazurin (blue copper protein).
 
 
 
 0.922
Meso_1450
PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01783 probable nitrate transporter protein.
    
 0.909
Meso_1453
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region BFD-like [2Fe-2S]-binding region; KEGG: mlo:mlr2864 nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.909
Meso_1451
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region BFD-like [2Fe-2S]-binding region; KEGG: nwi:Nwi_0719 BFD-like (2Fe-2S)-binding region.
     
 0.901
Meso_1452
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] region; KEGG: mlo:mlr2863 nitrite reductase small subunit.
     
  0.900
Meso_3082
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase.
     
  0.900
Meso_1244
PFAM: blue (type 1) copper domain; KEGG: hma:pNG6030 putative copper binding protein.
 
 
 
 0.846
Meso_2246
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: bja:blr7084 transcriptional regulatory protein.
 
   
 0.792
Meso_2247
KEGG: rpc:RPC_3946 hypothetical protein.
 
     0.766
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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