Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2262PFAM: NUDIX hydrolase; KEGG: sme:SMb20988 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Meso_4061
KEGG: sme:SMc04161 hypothetical protein.
  
     0.499
Meso_2700
PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll9685 probable DNA ligase.
 
     0.434
Meso_0491
PFAM: ABC-2 type transporter; KEGG: cef:CE0178 putative O-antigen export system permease protein.
  
     0.402
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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