Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2268KEGG: mta:Moth_1798 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Meso_2269
Hypothetical protein.
       0.779
Meso_2270
Hypothetical protein.
       0.667
Meso_2271
PFAM: membrane bound O-acyl transferase, MBOAT; KEGG: zmo:ZMO0446 putative alginate O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
       0.604
Meso_2272
Hypothetical protein.
       0.591
Meso_2267
Transketolase-like protein; PFAM: Transketolase, central region Transketolase-like; KEGG: gka:GK0711 thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit.
       0.568
Meso_2266
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit.
       0.435
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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