Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2278KEGG: hma:pNG6050 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Meso_2277
PFAM: Calcium-binding EF-hand; KEGG: ret:RHE_PE00236 hypothetical protein.
       0.668
Meso_2280
KEGG: mlo:mll6598 hypothetical protein.
 
     0.555
Meso_1296
KEGG: mlo:mll0095 hypothetical protein.
  
     0.509
Meso_2276
PFAM: heat shock protein Hsp20; KEGG: sme:SMa1118 probable HspC2 heat shock protein; Belongs to the small heat shock protein (HSP20) family.
 
     0.483
Meso_2284
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mlo:mll6595 hypothetical protein.
 
     0.468
Meso_0057
KEGG: mlo:mlr6132 outer membrane serine protease.
  
     0.442
Meso_2667
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase YHS E1-E2 ATPase-associated region; KEGG: mlo:mlr5325 cation transporting P-type ATPase.
 
     0.441
Meso_2279
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: rsp:RSP_2572 CrpK, Fnr-type transcriptional regulator.
       0.437
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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