Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2290PFAM: regulatory protein, ArsR; KEGG: rpb:RPB_4378 transcriptional regulator, ArsR family. (83 aa)    
Predicted Functional Partners:
Meso_2289
Sulfide-quinone oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3562 sulfide-quinone reductase.
 
     0.641
Meso_2288
KEGG: rpb:RPB_4303 hypothetical protein.
 
    0.612
Meso_2287
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sil:SPO1526 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.566
Meso_2286
PFAM: acriflavin resistance protein; KEGG: sil:SPO1525 transporter, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.532
Meso_3059
PFAM: SirA-like; KEGG: mlo:msr3579 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
     0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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