Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2293PFAM: NIPSNAP domain containing protein; KEGG: bpm:BURPS1710b_2212 NIPSNAP superfamily. (214 aa)    
Predicted Functional Partners:
Meso_2292
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: rpb:RPB_3090 fumarate reductase/succinate dehydrogenase flavoprotein.
 
     0.714
Meso_2294
PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: ppu:PP2608 shikimate dehydrogenase family protein.
       0.516
Meso_2295
PFAM: glucose-inhibited division protein A fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: tte:TTE2589 hypothetical protein.
       0.513
Meso_3723
Hypothetical protein; KEGG: gga:424836 similar to chromosome 21 open reading frame 29; TSP-EAR.
  
     0.493
Meso_2423
PFAM: phosphoesterase, RecJ-like; KEGG: mma:MM0213 putative single-stranded-DNA-specific exonuclease.
  
     0.442
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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