Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2315PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. (396 aa)    
Predicted Functional Partners:
Meso_2316
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
 
 
 0.991
Meso_2321
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
 
 
 0.986
Meso_0501
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
 
 
 0.965
Meso_3859
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
 
 
 0.965
Meso_2320
KEGG: mlo:mll9607 conjugal transfer protein trbJ.
 
 
 
 0.959
Meso_2318
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mll9606 conjugal transfer protein trbL.
 
   
 0.950
Meso_2317
PFAM: Conjugal transfer protein; KEGG: nwi:Nwi_2093 conjugal transfer protein.
 
   
 0.949
Meso_0506
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
 
 
 0.942
Meso_3854
ATPase; SMART: ATPase; KEGG: bja:bll8285 probable conjugal transfer protein.
 
 
 0.941
Meso_2314
KEGG: mlo:msl9602 hypothetical protein.
 
     0.938
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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