Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2345KEGG: nwi:Nwi_2129 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Meso_2346
KEGG: bja:bll0065 putative DNA-binding protein.
 
     0.905
Meso_2347
PFAM: ParB-like nuclease; KEGG: bja:bll0065 putative DNA-binding protein.
 
     0.889
Meso_2344
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.862
Meso_2348
KEGG: bja:bll0066 hypothetical protein.
 
     0.822
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
  0.812
Meso_2343
KEGG: nwi:Nwi_2132 hypothetical protein.
 
     0.802
Meso_1172
Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
  0.797
priA
Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
     
  0.797
Meso_0535
KEGG: mlo:mlr9704 probably methylase/helicase.
 
     0.781
Meso_0533
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.780
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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