Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2346KEGG: bja:bll0065 putative DNA-binding protein. (536 aa)    
Predicted Functional Partners:
Meso_2347
PFAM: ParB-like nuclease; KEGG: bja:bll0065 putative DNA-binding protein.
     0.993
Meso_2345
KEGG: nwi:Nwi_2129 hypothetical protein.
 
     0.905
Meso_2348
KEGG: bja:bll0066 hypothetical protein.
 
     0.871
Meso_2344
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.844
Meso_0533
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.779
Meso_3830
KEGG: nwi:Nwi_2130 hypothetical protein.
 
     0.779
Meso_0534
KEGG: bja:bll0064 hypothetical protein.
 
     0.778
Meso_3829
KEGG: nwi:Nwi_2129 hypothetical protein.
 
     0.778
Meso_2342
KEGG: rpa:RPA2244 hypothetical protein.
  
     0.689
Meso_0529
PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein.
  
     0.665
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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