Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2350TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; KEGG: afu:AF2089 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Meso_2349
Xanthosine triphosphate pyrophosphatase-like protein; KEGG: pto:PTO0809 hypothetical protein.
 
     0.846
Meso_2573
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_B5020 aromatic-ring hydroxylase.
     
  0.800
Meso_2351
Hypothetical protein.
       0.773
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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